Package index • CreelEstimateR

All functions

confirm_db_upload(): Confirm database upload

est_pe_catch(): Estimate catch with PE method

est_pe_effort(): Estimate effort with PE method

establish_db_con(): Establish database connection

export_estimates(): Export creel model estimates

fetch_db_table(): Query database tables

fetch_dwg(): Download creel dataset from data.wa.gov

fetch_fishery_names(): List all available fishery names

fit_bss(): Fits data to rstan model

generate_analysis_lut(): Generate analysis look up table

get_bss_catch_daily(): Get bss daily catch

get_bss_cpue_daily(): get daily bss cpue

get_bss_effort_daily(): Get bss effort

get_bss_overview(): get bss overview

get_fishery_data(): Obtain and format interview, catch, and effort data for sets of fishery-years

json_conversion(): Convert model estimate metadata objects to json format

map_data_grade(): Map datagrade ??

plot_est_pe_catch(): plot PE catch estimates by catch group (est_cg), period (time stratum) and section

plot_est_pe_effort(): plot PE effort estimates by period (time stratum) and section

plot_inputs_pe_census_vs_index(): Plot paired season-long counts from census and index angler effort count surveys

plot_inputs_pe_cpue_period(): Plot cpue by period, section_num, angler_final, and catch group

plot_inputs_pe_index_effort_counts(): Plot paired season-long counts from census and index angler effort count surveys

plot_paired_census_index(): plot paired census index

prep_days(): Title

prep_dwg_census_expan(): creates summary table of census expansion factors based on values in data base

prep_dwg_effort_census(): Aggregate census (tie in) effort counts, associating to closest-in-time index count.

prep_dwg_effort_index(): Aggregates index effort counts over locations within count_seq & section based on study_design and user input values for boat_type_collapse, fish_location_determines_type, angler_type_kayak_pontoon

prep_dwg_interview_angler_types(): Create angler_final field based on study_design designation and user input values for boat_type_collapse, fish_location_determines_type, angler_type_kayak_pontoon

prep_dwg_interview_fishing_time(): title

prep_export(): Prep export

prep_inputs_bss(): Create object/list of data inputs for BSS model

prep_inputs_pe_ang_hrs(): Title

prep_inputs_pe_daily_cpue_catch_est(): Calculate daily cpue by section, date (period, day_type), angler_final, and catch group (aka est_cg) using the Ratio-of-Means (rom) calculation

prep_inputs_pe_days_total(): Calculate total days the fishery was open per strata (strata = period, day_type, and section_num)

prep_inputs_pe_df(): Calculate degrees of freedom based on number of creel survey days

prep_inputs_pe_int_ang_per_object(): calculate the number of objects (e.g., trailers, vehicles, boats) each angler group brought to the fishery based on study_design used

prep_inputs_pe_paired_census_index_counts(): Summarize paired census and index angler effort counts

process_estimates_bss(): Title

process_estimates_pe(): Title

query_creel_website(): Query the creel website for specific combinations of data

search_fishery_name(): Find fishery names from a partial names

transform_estimates(): Title

write_lut(): Write look-up table

write_stratum(): Write stratum

write_total(): Write Total